readme更新
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README.md
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README.md
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@ -9,31 +9,6 @@ FScanpy is a comprehensive Python package designed for the prediction of [Progra
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## 🌟 Key Features
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### 🎯 **Dual-Model Architecture**
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- **Short Model** (`HistGradientBoosting`): Fast screening with 33bp sequences
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- **Long Model** (`BiLSTM-CNN`): Deep analysis with 399bp sequences
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- **Ensemble Prediction**: Customizable model weights for optimal performance
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### 🚀 **Versatile Input Support**
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- **Single/Multiple Sequences**: Sliding window prediction across full sequences
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- **Region-Based Analysis**: Direct prediction on pre-extracted 399bp regions
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- **BLASTX Integration**: Seamless workflow with FScanR pipeline
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- **Cross-Species Compatibility**: Built-in databases for viruses, marine phages, Euplotes, etc.
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### 📊 **Advanced Visualization**
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- **Interactive Heatmaps**: FS site probability visualization
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- **Prediction Plots**: Combined probability and confidence displays
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- **Customizable Thresholds**: Separate filtering for each model
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- **Export Options**: PNG, PDF, and interactive formats
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### ⚡ **High Performance**
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- **Optimized Algorithms**: Efficient sliding window scanning
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- **Batch Processing**: Handle multiple sequences simultaneously
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- **Flexible Thresholds**: Tunable sensitivity for different use cases
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- **Memory Efficient**: Optimized for large-scale genomic data
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## 🔧 Installation
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### Prerequisites
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README_zh.md
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README_zh.md
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@ -9,31 +9,6 @@ FScanpy 是一个专为预测核苷酸序列中[程序性核糖体移码 (PRF)](
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## 🌟 核心特性
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### 🎯 **双模型架构**
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- **短模型** (`HistGradientBoosting`):使用 33bp 序列进行快速筛选
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- **长模型** (`BiLSTM-CNN`):使用 399bp 序列进行深度分析
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- **集成预测**:可自定义模型权重以获得最佳性能
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### 🚀 **多样化输入支持**
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- **单/多序列**:对完整序列进行滑动窗口预测
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- **基于区域的分析**:直接对预提取的 399bp 区域进行预测
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- **BLASTX 集成**:与 FScanR 流程无缝衔接
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- **跨物种兼容性**:内置病毒、海洋噬菌体、Euplotes 等数据库
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### 📊 **高级可视化**
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- **交互式热图**:FS 位点概率可视化
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- **预测图表**:组合概率和置信度显示
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- **可定制阈值**:为每个模型单独设置过滤条件
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- **导出选项**:PNG、PDF 和交互式格式
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### ⚡ **高性能**
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- **优化算法**:高效的滑动窗口扫描
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- **批处理**:同时处理多个序列
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- **灵活阈值**:针对不同用例的可调敏感性
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- **内存高效**:针对大规模基因组数据进行优化
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## 🔧 安装
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### 前置条件
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