diff --git a/README.md b/README.md index acc7054..555e39f 100644 --- a/README.md +++ b/README.md @@ -9,31 +9,6 @@ FScanpy is a comprehensive Python package designed for the prediction of [Progra ![FScanpy Architecture](/tutorial/image/structure.jpeg) -## 🌟 Key Features - -### 🎯 **Dual-Model Architecture** -- **Short Model** (`HistGradientBoosting`): Fast screening with 33bp sequences -- **Long Model** (`BiLSTM-CNN`): Deep analysis with 399bp sequences -- **Ensemble Prediction**: Customizable model weights for optimal performance - -### 🚀 **Versatile Input Support** -- **Single/Multiple Sequences**: Sliding window prediction across full sequences -- **Region-Based Analysis**: Direct prediction on pre-extracted 399bp regions -- **BLASTX Integration**: Seamless workflow with FScanR pipeline -- **Cross-Species Compatibility**: Built-in databases for viruses, marine phages, Euplotes, etc. - -### 📊 **Advanced Visualization** -- **Interactive Heatmaps**: FS site probability visualization -- **Prediction Plots**: Combined probability and confidence displays -- **Customizable Thresholds**: Separate filtering for each model -- **Export Options**: PNG, PDF, and interactive formats - -### ⚡ **High Performance** -- **Optimized Algorithms**: Efficient sliding window scanning -- **Batch Processing**: Handle multiple sequences simultaneously -- **Flexible Thresholds**: Tunable sensitivity for different use cases -- **Memory Efficient**: Optimized for large-scale genomic data - ## 🔧 Installation ### Prerequisites diff --git a/README_zh.md b/README_zh.md index e08b0f0..aee3fc1 100644 --- a/README_zh.md +++ b/README_zh.md @@ -9,31 +9,6 @@ FScanpy 是一个专为预测核苷酸序列中[程序性核糖体移码 (PRF)]( ![FScanpy 架构](/tutorial/image/structure.jpeg) -## 🌟 核心特性 - -### 🎯 **双模型架构** -- **短模型** (`HistGradientBoosting`):使用 33bp 序列进行快速筛选 -- **长模型** (`BiLSTM-CNN`):使用 399bp 序列进行深度分析 -- **集成预测**:可自定义模型权重以获得最佳性能 - -### 🚀 **多样化输入支持** -- **单/多序列**:对完整序列进行滑动窗口预测 -- **基于区域的分析**:直接对预提取的 399bp 区域进行预测 -- **BLASTX 集成**:与 FScanR 流程无缝衔接 -- **跨物种兼容性**:内置病毒、海洋噬菌体、Euplotes 等数据库 - -### 📊 **高级可视化** -- **交互式热图**:FS 位点概率可视化 -- **预测图表**:组合概率和置信度显示 -- **可定制阈值**:为每个模型单独设置过滤条件 -- **导出选项**:PNG、PDF 和交互式格式 - -### ⚡ **高性能** -- **优化算法**:高效的滑动窗口扫描 -- **批处理**:同时处理多个序列 -- **灵活阈值**:针对不同用例的可调敏感性 -- **内存高效**:针对大规模基因组数据进行优化 - ## 🔧 安装 ### 前置条件